Biosensors at the molecular scale: measuring what is almost impossible to measure
PhD candidate Chris Vu defended his thesis at the Department of Biomedical Engineering on March 24, 2026. As part of the Molecular Biosensing research group, he investigated what happens when biosensors become so sensitive that they can detect individual molecules separately. His work showed how random processes at the molecular scale impose unavoidable limits on measurements, how smart design choices can bring sensors closer to those limits, and how weak molecular binders can be just as effective as strong ones for detecting low concentrations.
At the molecular scale, the world never stands still. Molecules are bound and released, react to their environment, and change constantly, often within seconds. Biosensors make this invisible world measurable by converting molecular interactions into signals that can be tracked and analyzed. Traditional biosensors, however, measure the collective behavior of enormous numbers of molecules at once. This produces clear, stable signals, but at the same time conceals many underlying details.
In recent years, scientists have developed new generations of biosensors capable of detecting individual molecules separately. Rather than a smooth measurement curve, these sensors produce a signal made up of discrete events, precisely at the moment molecules bound or released. This offers an unprecedented level of detail, but also fundamentally changes the nature of the measurement.
Chris Vu's research focused on what this shift toward single-molecule detection means for the functioning and limits of continuous biosensors. As a model system, he used Biosensing by Particle Motion: a setup in which microscopically small particles are coupled to a surface through molecular bonds. By tracking the motion of the particles over time, individual binding and release events could be directly observed.
What the research demonstrated
By tracking individual particles over many hours, Vu showed that no two sensor elements behaved in exactly the same way. Small differences in molecular interactions accumulated over time and led to clearly measurable variations between sensor elements. Using mathematical models and computer simulations, these observations were traced back to fundamental processes at the molecular scale, such as the number of functional binding molecules on the surface of sensor elements and how these molecules gradually change over time.
Beyond describing these effects, the research posed a more fundamental question: where did the limits of continuous measurements based on individual molecules lie? How quickly could changes be detected, and how accurate could a measurement in principle be when every signal was built up from separate molecular events? By systematically investigating different scaling laws, the research showed that random processes at the molecular scale imposed unavoidable limitations, but also that thoughtful design choices could bring sensors closer to those limits.
A surprising finding
One of the most striking outcomes of the research challenges the current consensus in the field. It is widely assumed that strong molecular interactions are needed to detect low concentrations of molecules. However, the models developed in this work showed that weak binders can achieve detection limits comparable to those of strong binders. The added benefit is that sensors based on weak interactions can produce continuous measurements, which is especially important for tracking dynamic processes in real time.
What this means for society
The insights from this thesis are relevant to anyone developing or applying biosensors, from medical diagnostics to fundamental scientific research. The findings offer:
- A better understanding of variations between sensor elements and how to account for them
- Guidance for designing more accurate and faster biosensors
- A principled framework for what is and is not measurable at the single-molecule level
In short, what at first appeared to be noise or instability turned out to contain valuable information. By embracing the complexity of single-molecule behavior and making use of it, this work contributed to a more principled and powerful understanding of biosensing at the smallest scale.
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Supervisors
Supervisor: Prof.dr.ir. M.W.J. Prins (Department of Biomedical Engineering, Department of Applied Physics and Science Education)
Co-supervisor: Dr.ir. A.M. de Jong (Department of Applied Physics and Science Education)
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